PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g083190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 229aa    MW: 26057.4 Da    PI: 9.9227
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g083190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.9e-17131224199
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f  vl ps+  + ++++lp  fae++ +g++ +   ++  ++  ++W v++    k gr  +++GW eF  +n++ egD++vF+l ++++f l+v
  Csa17g083190.1 131 FRVVLRPSYLYRGCIMYLPSGFAEKYlSGIS-GF--IK-LQLGEKQWPVRC--LYKAGRAKFSQGWYEFTLENNIGEGDVCVFELLRTRDFILKV 219
                     678899********************85452.33..44.44688*******..666666779************************99***9*99 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     ++fr 
  Csa17g083190.1 220 TAFRV 224
                     99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-23123223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-22124225IPR015300DNA-binding pseudobarrel domain
CDDcd100175.57E-21129223No hitNo description
PROSITE profilePS5086312.52131225IPR003340B3 DNA binding domain
PfamPF023622.0E-15131224IPR003340B3 DNA binding domain
SMARTSM010191.6E-19131225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0034613Biological Processcellular protein localization
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDMNSAQNHF NKRARLFEDP NDRDARVMYP SNPTSTEQPV NRGGYGGSTA IQSFFKDSKP  60
EETPKVLKKR GRKKKNPNPE DINSSTPGGD DSENRSKFYE SASARKRTVT AEERERAVTA  120
AKTFEPANPF FRVVLRPSYL YRGCIMYLPS GFAEKYLSGI SGFIKLQLGE KQWPVRCLYK  180
AGRAKFSQGW YEFTLENNIG EGDVCVFELL RTRDFILKVT AFRVNEYV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-919722815146B3 domain-containing transcription factor VRN
4i1k_B6e-919722815146B3 domain-containing transcription factor VRN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00192DAPTransfer from AT1G49480Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0156820.0BT015682.1 Arabidopsis thaliana At1g49480 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010479380.11e-170PREDICTED: B3 domain-containing protein REM19-like
SwissprotQ9XIB51e-154REM19_ARATH; B3 domain-containing protein REM19
TrEMBLR0IJ371e-159R0IJ37_9BRAS; Uncharacterized protein
STRINGscaffold_104641.11e-153(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-127related to vernalization1 1